STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0378Hypothetical protein. (109 aa)    
Predicted Functional Partners:
Hhal_0379
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0282 ABC transporter, ATP-binding protein.
       0.675
Hhal_0380
PFAM: cobalt transport protein; KEGG: tde:TDE0905 hypothetical protein.
       0.675
Hhal_0381
KEGG: mth:MTH452 hypothetical protein.
       0.675
Hhal_0382
KEGG: aha:AHA_3505 NAD dependent epimerase/dehydratase family.
       0.675
Hhal_0383
Heme utilization protein HuvX; PFAM: protein of unknown function DUF1008; KEGG: yps:YPTB0343 hypothetical protein.
       0.675
Hhal_0384
Coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: yps:YPTB0344 putative coproporphyrinogen III oxidase.
       0.675
Hhal_0385
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pau:PA14_39650 putative TonB-dependent receptor.
       0.670
Hhal_0377
Hypothetical protein.
       0.450
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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