STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0379PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0282 ABC transporter, ATP-binding protein. (464 aa)    
Predicted Functional Partners:
Hhal_0380
PFAM: cobalt transport protein; KEGG: tde:TDE0905 hypothetical protein.
 
 
 0.994
Hhal_0384
Coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: yps:YPTB0344 putative coproporphyrinogen III oxidase.
 
    0.821
Hhal_0383
Heme utilization protein HuvX; PFAM: protein of unknown function DUF1008; KEGG: yps:YPTB0343 hypothetical protein.
 
     0.817
Hhal_1077
KEGG: aeh:Mlg_2177 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
0.798
Hhal_1078
KEGG: aeh:Mlg_2176 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
0.797
Hhal_0381
KEGG: mth:MTH452 hypothetical protein.
       0.792
Hhal_1075
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_2179 binding-protein-dependent transport systems inner membrane component.
  
  
 0.785
Hhal_0382
KEGG: aha:AHA_3505 NAD dependent epimerase/dehydratase family.
       0.773
Hhal_0385
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pau:PA14_39650 putative TonB-dependent receptor.
       0.770
Hhal_1076
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_2178 binding-protein-dependent transport systems inner membrane component.
 
  
 0.767
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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