STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0380PFAM: cobalt transport protein; KEGG: tde:TDE0905 hypothetical protein. (254 aa)    
Predicted Functional Partners:
Hhal_0379
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0282 ABC transporter, ATP-binding protein.
 
 
 0.994
Hhal_0384
Coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: yps:YPTB0344 putative coproporphyrinogen III oxidase.
 
     0.863
Hhal_0383
Heme utilization protein HuvX; PFAM: protein of unknown function DUF1008; KEGG: yps:YPTB0343 hypothetical protein.
 
     0.836
Hhal_0381
KEGG: mth:MTH452 hypothetical protein.
       0.792
Hhal_0385
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pau:PA14_39650 putative TonB-dependent receptor.
       0.780
Hhal_0382
KEGG: aha:AHA_3505 NAD dependent epimerase/dehydratase family.
       0.773
Hhal_1348
KEGG: mca:MCA2296 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
  
 0.694
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.686
Hhal_0378
Hypothetical protein.
       0.675
cysG1
uroporphyrinogen-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
     
 0.498
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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