STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0423PFAM: ADP-ribosylation/Crystallin J1; KEGG: mag:amb1627 ADP-ribosylglycohydrolase. (253 aa)    
Predicted Functional Partners:
Hhal_0909
PFAM: Appr-1-p processing domain protein; KEGG: aeh:Mlg_0422 Appr-1-p processing domain protein.
    
 0.863
Hhal_0424
KEGG: noc:Noc_2712 hypothetical protein.
       0.773
Hhal_1155
PFAM: N-6 DNA methylase; KEGG: noc:Noc_2687 N-6 DNA methylase.
      0.593
Hhal_2237
PFAM: nitrogen regulatory protein P-II; KEGG: aeh:Mlg_2550 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.491
Hhal_2406
PFAM: nitrogen regulatory protein P-II; KEGG: aeh:Mlg_0080 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.491
Hhal_0422
KEGG: bch:Bcen2424_4664 conserved hypothetical protein.
       0.426
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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