STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0457PFAM: Patatin; KEGG: aeh:Mlg_1469 patatin. (322 aa)    
Predicted Functional Partners:
Hhal_0455
KEGG: aeh:Mlg_1466 hypothetical protein.
       0.631
Hhal_0456
KEGG: aeh:Mlg_1467 hypothetical protein.
       0.631
Hhal_0052
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; KEGG: aeh:Mlg_1601 AMP-dependent synthetase and ligase.
  
  
 0.551
Hhal_0458
KEGG: aeh:Mlg_1470 hypothetical protein.
       0.463
Hhal_0452
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aeh:Mlg_1846 biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1.
  
    0.434
Hhal_0453
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aeh:Mlg_1847 biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1.
  
    0.434
Hhal_0454
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1848 MotA/TolQ/ExbB proton channel; TC 2.C.1.1.1.
  
    0.431
Hhal_0451
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
       0.429
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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