STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0468PFAM: Cupin 2, conserved barrel domain protein; KEGG: aeh:Mlg_1167 cupin 2, conserved barrel domain protein. (157 aa)    
Predicted Functional Partners:
Hhal_0467
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: aeh:Mlg_1168 ribulose-bisphosphate carboxylase.
     0.993
Hhal_0466
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aeh:Mlg_1170 diguanylate cyclase.
       0.701
Hhal_0469
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: aeh:Mlg_1166 protein of unknown function DUF21.
       0.693
Hhal_2273
KEGG: aeh:Mlg_2768 hypothetical protein.
  
     0.534
Hhal_0465
Regulator of ribonuclease activity A; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity).
       0.507
Hhal_0494
TIGRFAM: flagellar export protein FliJ; KEGG: aeh:Mlg_0713 flagellar export protein FliJ.
  
     0.423
Hhal_0464
Heat shock protein Hsp15; PFAM: RNA-binding S4 domain protein; KEGG: aeh:Mlg_1173 RNA-binding S4 domain protein; Belongs to the HSP15 family.
       0.419
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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