STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0489KEGG: aeh:Mlg_0973 hypothetical protein. (496 aa)    
Predicted Functional Partners:
Hhal_0490
PFAM: periplasmic solute binding protein; KEGG: aeh:Mlg_0972 periplasmic solute binding protein.
 
     0.941
Hhal_0492
PFAM: ABC-3 protein; KEGG: aeh:Mlg_0970 ABC-3 protein.
 
     0.921
Hhal_0491
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_0971 ABC transporter related.
 
     0.827
Hhal_1311
SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: aeh:Mlg_0507 hypothetical protein.
  
     0.661
Hhal_1527
KEGG: aeh:Mlg_0153 hypothetical protein.
  
     0.634
Hhal_2278
KEGG: aeh:Mlg_0018 hypothetical protein.
  
     0.621
Hhal_1818
Putative PAS/PAC sensor protein; KEGG: ilo:IL2385 photoactive yellow protein; TIGRFAM: photoactive yellow protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein.
  
     0.619
Hhal_1282
PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: aeh:Mlg_0507 hypothetical protein.
  
     0.611
Hhal_1333
Putative PAS/PAC sensor protein; TIGRFAM: photoactive yellow protein; PFAM: PAS fold domain protein; KEGG: ilo:IL2385 photoactive yellow protein.
  
     0.592
Hhal_2050
PFAM: porin, Gram-negative type; KEGG: aeh:Mlg_0593 porin, gram-negative type.
 
    0.570
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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