STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0490PFAM: periplasmic solute binding protein; KEGG: aeh:Mlg_0972 periplasmic solute binding protein. (300 aa)    
Predicted Functional Partners:
Hhal_0492
PFAM: ABC-3 protein; KEGG: aeh:Mlg_0970 ABC-3 protein.
 
  
 0.965
Hhal_0489
KEGG: aeh:Mlg_0973 hypothetical protein.
 
     0.941
Hhal_2175
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1042 ABC transporter related.
 
  
 0.914
Hhal_2174
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: aeh:Mlg_1043 ABC-3 protein.
 
  
 0.843
Hhal_0491
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_0971 ABC transporter related.
 
     0.796
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.750
Hhal_1727
PFAM: ABC-3 protein; KEGG: aeh:Mlg_1197 ABC-3 protein.
 
  
 0.705
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
     
 0.547
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.521
rpmB
PFAM: ribosomal protein L28; KEGG: aeh:Mlg_2641 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.506
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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