STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
Experiments
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Textmining
[Homology]
Score
Hhal_0501Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: aeh:Mlg_0706 sigma54 specific transcriptional regulator, fis family. (466 aa)    
Predicted Functional Partners:
Hhal_2126
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.788
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: aeh:Mlg_0708 flagellar hook-basal body complex subunit FliE.
  
  
 0.711
Hhal_0498
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.700
Hhal_0497
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.696
Hhal_0503
PFAM: flagellar protein FliS; KEGG: aeh:Mlg_0704 flagellar protein FliS.
  
  
 0.680
Hhal_0496
PFAM: flagellar assembly protein FliH; KEGG: aeh:Mlg_0711 flagellar assembly protein FliH.
  
  
 0.655
Hhal_0495
KEGG: aeh:Mlg_0712 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase.
  
  
 0.654
Hhal_0500
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: aeh:Mlg_0707 two component, sigma54 specific, transcriptional regulator, fis family.
 
    
0.626
Hhal_0478
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: aeh:Mlg_0984 cobyrinic acid a,c-diamide synthase.
 
 
 0.622
Hhal_0493
PFAM: flagellar hook-length control protein; KEGG: aeh:Mlg_0714 flagellar hook-length control protein.
 
    0.607
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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