STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0508PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: aeh:Mlg_0878 TonB-dependent receptor. (764 aa)    
Predicted Functional Partners:
Hhal_2376
KEGG: aeh:Mlg_2402 general secretion pathway protein C.
  
     0.442
Hhal_1311
SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: aeh:Mlg_0507 hypothetical protein.
  
     0.433
Hhal_0492
PFAM: ABC-3 protein; KEGG: aeh:Mlg_0970 ABC-3 protein.
  
     0.429
Hhal_0509
Hypothetical protein; KEGG: aeh:Mlg_1500 putative outer-membrane protein.
       0.424
Hhal_1074
KEGG: aeh:Mlg_2180 solute binding protein-like protein.
  
     0.420
Hhal_1818
Putative PAS/PAC sensor protein; KEGG: ilo:IL2385 photoactive yellow protein; TIGRFAM: photoactive yellow protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein.
  
     0.407
Hhal_1282
PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: aeh:Mlg_0507 hypothetical protein.
  
     0.406
Hhal_1333
Putative PAS/PAC sensor protein; TIGRFAM: photoactive yellow protein; PFAM: PAS fold domain protein; KEGG: ilo:IL2385 photoactive yellow protein.
  
     0.403
Hhal_1711
KEGG: aeh:Mlg_0827 hypothetical protein.
  
     0.401
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.