STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0531KEGG: aeh:Mlg_1157 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Hhal_0532
SMART: helicase c2; KEGG: aeh:Mlg_1156 helicase C2.
       0.773
Hhal_0533
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aeh:Mlg_1155 tetratricopeptide TPR_2 repeat protein.
       0.773
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.571
Hhal_0534
PFAM: chemotaxis sensory transducer; KEGG: aeh:Mlg_1153 methyl-accepting chemotaxis sensory transducer.
       0.503
rpsP
PFAM: ribosomal protein S16; KEGG: aeh:Mlg_0884 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.500
Hhal_0535
PFAM: chemotaxis sensory transducer; KEGG: aeh:Mlg_1152 methyl-accepting chemotaxis sensory transducer.
       0.459
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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