STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0597PFAM: extracellular solute-binding protein, family 5; KEGG: aeh:Mlg_2274 extracellular solute-binding protein, family 5. (633 aa)    
Predicted Functional Partners:
Hhal_0596
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_2271 binding-protein-dependent transport systems inner membrane component.
  
 0.987
Hhal_0595
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1808 putative peptide transport system permease protein.
 
  
 0.971
Hhal_0594
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: rle:RL0188 putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
 
  
 0.967
Hhal_1075
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_2179 binding-protein-dependent transport systems inner membrane component.
  
 
 0.920
Hhal_0379
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0282 ABC transporter, ATP-binding protein.
  
 0.824
Hhal_0598
Enoyl-[acyl-carrier-protein] reductase (NADH); PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aeh:Mlg_2277 short-chain dehydrogenase/reductase SDR.
  
    0.667
Hhal_1076
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_2178 binding-protein-dependent transport systems inner membrane component.
  
  
 0.536
Hhal_0593
KEGG: aeh:Mlg_0753 hypothetical protein.
       0.496
Hhal_1815
PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: aeh:Mlg_0228 cobalamin synthesis protein, P47K.
 
      0.490
Hhal_0066
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpa:RPA4721 possible+E2677 pyruvate-flavodoxin oxidoreductase.
     
 0.452
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.