STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0624TIGRFAM: putative CRISPR-associated protein, VVA1548 family; KEGG: net:Neut_2222 putative CRISPR-associated protein, VVA1548 family protein. (103 aa)    
Predicted Functional Partners:
Hhal_0623
KEGG: vch:VC1899 hypothetical protein.
    
 0.709
Hhal_0627
TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: tte:TTE2639 predicted hydrolase of the HD superfamily (permuted catalytic motifs).
     
 0.556
Hhal_0628
TIGRFAM: CRISPR-associated protein, Cmr3 family; KEGG: rxy:Rxyl_0262 hypothetical protein.
     
 0.503
Hhal_0625
TIGRFAM: CRISPR-associated protein, NE0113 family; KEGG: neu:NE0113 hypothetical protein.
       0.502
Hhal_0626
KEGG: rxy:Rxyl_0264 CRISPR-associated protein TM1795 family-like protein.
       0.502
Hhal_0629
TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: tth:TT_P0118 hypothetical protein.
     
 0.497
Hhal_0631
TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: rxy:Rxyl_0259 CRISPR-associated protein, TM1791.
     
 0.492
Hhal_0630
TIGRFAM: CRISPR-associated protein, Cmr5 family.
       0.485
Hhal_0632
KEGG: neu:NE0117 hypothetical protein.
       0.484
cas2-2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
     
 0.428
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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