STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0909PFAM: Appr-1-p processing domain protein; KEGG: aeh:Mlg_0422 Appr-1-p processing domain protein. (181 aa)    
Predicted Functional Partners:
Hhal_0423
PFAM: ADP-ribosylation/Crystallin J1; KEGG: mag:amb1627 ADP-ribosylglycohydrolase.
    
 0.870
Hhal_0908
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aeh:Mlg_1737 peptidase M20.
       0.773
cmk
KEGG: aeh:Mlg_0930 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
 
      0.642
Hhal_0910
PFAM: heat shock protein DnaJ domain protein; KEGG: aeh:Mlg_2252 heat shock protein DnaJ domain protein.
  
    0.576
Hhal_0915
Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: aeh:Mlg_2256 deoxyribodipyrimidine photo-lyase.
     
 0.440
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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