STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0914PFAM: regulatory protein, MerR; KEGG: aeh:Mlg_2255 transcriptional regulator, MerR family. (298 aa)    
Predicted Functional Partners:
Hhal_0915
Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: aeh:Mlg_2256 deoxyribodipyrimidine photo-lyase.
 
  
 0.936
Hhal_0912
PFAM: protein of unknown function DUF1365; KEGG: aeh:Mlg_0326 protein of unknown function DUF1365.
     
 0.841
Hhal_0911
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aeh:Mlg_2253 amine oxidase.
     
 0.837
Hhal_0260
PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: aeh:Mlg_1208 protein of unknown function DUF1722.
  
 0.811
Hhal_0913
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: aeh:Mlg_2254 cyclopropane-fatty-acyl-phospholipid synthase.
     
 0.793
purC
KEGG: aeh:Mlg_2257 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.
       0.757
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.662
Hhal_0366
KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.620
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.558
Hhal_0917
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rru:Rru_A1622 transcriptional regulator, Crp/Fnr family.
     
 0.549
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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