STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0925PFAM: peptidase M42 family protein; KEGG: aeh:Mlg_1913 peptidase M42 family protein. (420 aa)    
Predicted Functional Partners:
Hhal_0208
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase, family 2; KEGG: plt:Plut_0992 cellulose synthase (UDP-forming).
     
  0.900
Hhal_1711
KEGG: aeh:Mlg_0827 hypothetical protein.
  
     0.631
Hhal_0393
PFAM: major facilitator superfamily MFS_1; KEGG: ilo:IL2482 sugar efflux permease, MFS-like.
  
     0.606
Hhal_0016
KEGG: aeh:Mlg_1375 hypothetical protein.
  
     0.605
Hhal_0926
PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mlr3603 hypothetical protein.
       0.577
Hhal_1074
KEGG: aeh:Mlg_2180 solute binding protein-like protein.
  
     0.528
Hhal_1311
SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: aeh:Mlg_0507 hypothetical protein.
 
     0.523
Hhal_0089
KEGG: sfr:Sfri_3838 hypothetical protein.
  
     0.487
Hhal_1282
PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: aeh:Mlg_0507 hypothetical protein.
 
     0.474
Hhal_1060
PFAM: protein of unknown function DUF6, transmembrane; KEGG: aeh:Mlg_2581 hypothetical protein.
  
     0.448
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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