STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
Experiments
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[Homology]
Score
Hhal_0985KEGG: aeh:Mlg_0414 ribosomal subunit interface protein, putative. (115 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; KEGG: aeh:Mlg_2519 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.798
rpsI
PFAM: ribosomal protein S9; KEGG: aeh:Mlg_2241 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.796
rpmA
PFAM: ribosomal protein L27; KEGG: aeh:Mlg_0846 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.794
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.792
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
   
   0.790
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
   
   0.790
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
   0.789
rpmE2
PFAM: ribosomal protein L31; KEGG: aeh:Mlg_2751 ribosomal protein L31.
   
   0.789
rpmH
PFAM: ribosomal protein L34; KEGG: noc:Noc_3089 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
    
 
 0.788
rplE
LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
   
   0.787
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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