STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1018PFAM: Nucleotidyl transferase; KEGG: aeh:Mlg_0197 nucleotidyl transferase. (228 aa)    
Predicted Functional Partners:
Hhal_1019
PFAM: aminoglycoside phosphotransferase; KEGG: aeh:Mlg_0198 aminoglycoside phosphotransferase.
 
 0.999
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
    
  0.900
murB-2
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
    
  0.900
Hhal_0760
PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: mba:Mbar_A0022 UDP-N-acetylglucosamine enolpyruvyl transferase.
    
  0.801
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
    
  0.801
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
     
  0.800
Hhal_1017
PFAM: glutamate--cysteine ligase, GCS2; KEGG: aeh:Mlg_0196 hypothetical protein.
       0.790
Hhal_1538
KEGG: aeh:Mlg_0100 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
  
  
 0.751
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
     0.708
Hhal_0910
PFAM: heat shock protein DnaJ domain protein; KEGG: aeh:Mlg_2252 heat shock protein DnaJ domain protein.
 
    0.698
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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