STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1028PFAM: HemY domain protein; Tetratricopeptide TPR_4; KEGG: aeh:Mlg_2667 HemY domain protein. (441 aa)    
Predicted Functional Partners:
Hhal_1027
PFAM: protein of unknown function DUF513, hemX; KEGG: aeh:Mlg_2668 protein of unknown function DUF513, HemX.
 
  
 0.985
Hhal_1026
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
   
 0.884
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
  
 0.880
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
     0.734
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: aeh:Mlg_2673 argininosuccinate lyase.
       0.606
Hhal_0682
PFAM: DNA polymerase III chi subunit, HolC; KEGG: noc:Noc_0288 DNA polymerase III chi subunit, HolC.
  
     0.584
Hhal_1051
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: aeh:Mlg_2828 porphobilinogen synthase; Belongs to the ALAD family.
     
 0.554
Hhal_1140
PFAM: AsmA family protein; KEGG: aeh:Mlg_2694 AsmA family protein.
 
     0.544
Hhal_1787
KEGG: aeh:Mlg_1253 hypothetical protein.
 
     0.519
Hhal_1201
PFAM: protein of unknown function DUF484; KEGG: aeh:Mlg_0062 protein of unknown function DUF484.
 
    0.517
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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