STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1033PFAM: peptidase U32; KEGG: pae:PA3912 hypothetical protein. (300 aa)    
Predicted Functional Partners:
Hhal_1034
PFAM: peptidase U32; KEGG: aeh:Mlg_2136 peptidase U32.
 
 0.997
Hhal_1032
PFAM: Sterol-binding domain protein; KEGG: aeh:Mlg_2134 hypothetical protein.
 
  
 0.985
Hhal_1031
PFAM: NAD-glutamate dehydrogenase; KEGG: aeh:Mlg_2779 NAD-glutamate dehydrogenase.
       0.532
Hhal_1030
PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: aeh:Mlg_2781 alpha/beta hydrolase fold.
       0.512
Hhal_1029
Allosteric NADP-dependent malic enzyme; Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: aeh:Mlg_0246 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)).
  
    0.413
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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