STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1052PFAM: protein of unknown function DUF47; KEGG: aeh:Mlg_2827 protein of unknown function DUF47. (224 aa)    
Predicted Functional Partners:
Hhal_1053
PFAM: phosphate transporter; KEGG: aeh:Mlg_2826 phosphate transporter.
 
  
 0.993
Hhal_1051
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: aeh:Mlg_2828 porphobilinogen synthase; Belongs to the ALAD family.
       0.773
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
    0.740
Hhal_1050
Hypothetical protein; KEGG: nph:NP2154A flagella accessory protein FlaCE.
       0.515
Hhal_0828
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: aeh:Mlg_0490 beta-lactamase domain protein.
   
  
 0.447
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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