STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1083PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: hne:HNE_0979 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Hhal_1082
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aeh:Mlg_0420 methyltransferase type 12.
 
 
   0.812
Hhal_1081
PFAM: Patatin; KEGG: sfu:Sfum_1839 patatin.
  
    0.542
Hhal_0617
PFAM: transposase IS3/IS911 family protein; KEGG: mxa:MXAN_1716 transposase orfA, IS3 family.
  
     0.539
Hhal_1080
KEGG: rru:Rru_A0630 hypothetical protein.
       0.539
Hhal_1084
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: aeh:Mlg_2607 dihydrolipoamide dehydrogenase.
       0.527
Hhal_2273
KEGG: aeh:Mlg_2768 hypothetical protein.
  
     0.478
Hhal_1604
Photosynthetic reaction center, M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
    
   0.474
Hhal_1605
TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: rde:RD1_0104 photosynthetic reaction center L subunit.
    
   0.474
Hhal_1631
PFAM: photosynthetic reaction centre, H-chain; PRC-barrel domain protein; KEGG: rpe:RPE_1353 photosynthetic reaction centre, H-chain.
    
   0.474
Hhal_1917
PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_1574 protein of unknown function DUF214.
    
   0.474
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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