STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1122PFAM: Carboxymuconolactone decarboxylase; KEGG: aha:AHA_1548 4-carboxymuconolactone decarboxylase domain protein. (198 aa)    
Predicted Functional Partners:
Hhal_1123
PFAM: protein of unknown function DUF123; KEGG: aeh:Mlg_1038 protein of unknown function DUF123.
       0.773
Hhal_1124
PAS/PAC sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: reh:H16_A0828 signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain.
       0.752
Hhal_1121
PFAM: glycoside hydrolase 15-related; KEGG: aeh:Mlg_0006 glycoside hydrolase 15-related.
       0.653
cysC-2
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
    0.652
Hhal_1119
PFAM: Glucokinase; KEGG: aeh:Mlg_0008 glucokinase; Belongs to the bacterial glucokinase family.
       0.636
Hhal_1120
Trehalose 6-phosphate synthase; PFAM: glycosyl transferase, family 20; KEGG: aeh:Mlg_0007 alpha,alpha-trehalose-phosphate synthase (UDP-forming).
       0.636
Hhal_1117
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: aeh:Mlg_2780 type I phosphodiesterase/nucleotide pyrophosphatase.
       0.518
Hhal_1118
GAF sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sde:Sde_1409 signal transduction histidine kinase-like.
       0.518
Hhal_1116
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cvi:CV3508 probable 6-pyruvoyltetrahydrobiopterin synthase.
 
     0.481
Hhal_1125
KEGG: pfo:Pfl_4658 chemotaxis sensory transducer, PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.414
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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