STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1153PFAM: restriction modification system DNA specificity domain; KEGG: tbd:Tbd_2682 putative restriction endonuclease S subunit. (429 aa)    
Predicted Functional Partners:
Hhal_1155
PFAM: N-6 DNA methylase; KEGG: noc:Noc_2687 N-6 DNA methylase.
 
 0.999
Hhal_1151
PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: noc:Noc_2689 hypothetical protein.
 
  
 0.991
Hhal_1152
KEGG: abo:ABO_2085 hypothetical protein.
 
     0.853
Hhal_1154
PFAM: Abi family protein; KEGG: cch:Cag_1061 conserved hypothetical phage AbiD protein.
 
     0.816
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.587
Hhal_1150
KEGG: bja:blr0872 hypothetical protein.
       0.449
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.