STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1166Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: aeh:Mlg_0633 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (750 aa)    
Predicted Functional Partners:
Hhal_1961
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aeh:Mlg_1663 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
 0.985
Hhal_1165
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aeh:Mlg_0634 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
 0.977
Hhal_1962
PFAM: Polysulphide reductase, NrfD; KEGG: aeh:Mlg_1664 polysulphide reductase, NrfD.
 
 0.973
Hhal_0187
Flavodoxin/nitric oxide synthase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: aeh:Mlg_1892 flavodoxin/nitric oxide synthase.
   
  0.971
Hhal_1164
KEGG: aeh:Mlg_0635 formate dehydrogenase gamma subunit.
 
 
 0.944
Hhal_1957
PFAM: Nitrate reductase, gamma subunit; KEGG: aeh:Mlg_1659 nitrate reductase, gamma subunit.
 
  
 0.928
Hhal_1951
KEGG: aeh:Mlg_1653 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
 
  
 0.927
Hhal_1162
PFAM: cytochrome c, class I; KEGG: cch:Cag_2005 sulfide dehydrogenase, cytochrome subunit.
   
 0.926
Hhal_1330
Cytochrome c553-like protein; KEGG: cch:Cag_2005 sulfide dehydrogenase, cytochrome subunit.
   
 0.926
Hhal_1946
PFAM: cytochrome c, class I; KEGG: aeh:Mlg_1673 cytochrome c, class I.
   
 0.926
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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