STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmFTIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: aeh:Mlg_1425 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (59 aa)    
Predicted Functional Partners:
rpsB
PFAM: ribosomal protein S2; KEGG: aeh:Mlg_1863 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 0.998
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
 
 
 0.997
rplL
LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 0.997
rpmI
PFAM: ribosomal protein L35; KEGG: aeh:Mlg_0766 ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.996
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 0.996
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.996
rpsT
SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.
   
 
 0.996
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.996
rpmG
PFAM: ribosomal protein L33; KEGG: aeh:Mlg_2642 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.996
rpmB
PFAM: ribosomal protein L28; KEGG: aeh:Mlg_2641 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.996
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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