STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1314PFAM: beta-lactamase domain protein; KEGG: lmo:lmo0945 hypothetical protein. (363 aa)    
Predicted Functional Partners:
Hhal_2022
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.878
Hhal_1249
PFAM: ComEC/Rec2-related protein; KEGG: aeh:Mlg_1437 ComEC/Rec2-related protein.
  
 0.773
Hhal_2324
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: aeh:Mlg_2630 DNA protecting protein DprA.
 
  
 0.769
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
      0.768
Hhal_0964
KEGG: aeh:Mlg_2437 competence protein F.
 
  
 0.767
Hhal_0326
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: hch:HCH_06149 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
  
 0.648
Hhal_2020
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: aeh:Mlg_2079 type IV-A pilus assembly ATPase PilB.
  
  
 0.648
Hhal_2377
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 0.648
Hhal_0325
PFAM: type II secretion system protein; KEGG: ilo:IL0371 type II secretory pathway.
  
  
 0.613
Hhal_2021
PFAM: type II secretion system protein; KEGG: ppu:PP_0633 type IV pili biogenesis protein PilC.
  
  
 0.613
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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