STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1339Signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: noc:Noc_0783 signal transduction histidine kinase. (495 aa)    
Predicted Functional Partners:
Hhal_1340
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: mca:MCA1713 sigma-54 dependent DNA-binding response regulator.
 
 
  0.988
Hhal_2126
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.904
Hhal_1338
Histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; KEGG: mgm:Mmc1_3189 PAS/PAC sensor hybrid histidine kinase.
 
 
0.854
Hhal_1901
PFAM: response regulator receiver; KEGG: aeh:Mlg_0669 response regulator receiver protein.
 
 0.812
Hhal_0098
Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aeh:Mlg_1105 two component transcriptional regulator, winged helix family.
 
 
 0.783
Hhal_1337
Putative PAS/PAC sensor protein; PFAM: PAS fold domain protein; KEGG: rpe:RPE_4639 transcriptional regulator, fis family.
  
   0.781
Hhal_0205
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sat:SYN_00230 response regulator receiver domain and a sigma factor phosphatase domain.
 
 0.771
Hhal_2383
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: gsu:GSU2492 sensory box histidine kinase.
  
 
   0.759
Hhal_2168
PFAM: response regulator receiver; KEGG: hch:HCH_00454 FOG: CheY-like receiver.
 
 
 0.619
Hhal_1216
KEGG: aeh:Mlg_0015 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 
 0.617
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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