STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1385KEGG: aha:AHA_3720 hypothetical protein. (187 aa)    
Predicted Functional Partners:
Hhal_1383
PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1421 thiopurine S-methyltransferase.
       0.718
Hhal_1384
TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: aha:AHA_3719 transporter, betaine/carnitine/choline transporter (BCCT) family; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.718
Hhal_1386
Hypothetical protein.
       0.539
Hhal_1382
PFAM: permease; KEGG: aeh:Mlg_2651 permease.
       0.508
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.