STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1411Light-harvesting protein B800/850/890 beta-1 chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers (75 aa)    
Predicted Functional Partners:
Hhal_1410
Light-harvesting protein B800/850/890 alpha-1 chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers
 
  
  0.992
Hhal_1604
Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis
  
 
  0.976
Hhal_1605
TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: rde:RD1_0104 photosynthetic reaction center L subunit
  
 
  0.976
Hhal_1631
PFAM: photosynthetic reaction centre, H-chain; PRC-barrel domain protein; KEGG: rpe:RPE_1353 photosynthetic reaction centre, H-chain
  
 
   0.888
Hhal_1603
Photosynthetic reaction center cytochrome c subunit; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor
  
 
   0.881
Hhal_1606
Light-harvesting protein B800/850/890 alpha-2 chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers
  
  
  0.849
Hhal_1630
KEGG: rsp:RSP_0292 hypothetical protein
  
     0.784
Hhal_1628
KEGG: rru:Rru_A0614 hypothetical protein
  
     0.783
Hhal_1639
PFAM: helix-turn-helix, Fis-type; KEGG: rpd:RPD_3748 transcriptional regulator PpsR
  
     0.783
Hhal_1609
TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpd:RPD_3755 chlorophyllide reductase subunit Y
  
     0.782
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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