STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1412PFAM: OmpA/MotB domain protein; KEGG: aeh:Mlg_1455 OmpA/MotB domain protein. (321 aa)    
Predicted Functional Partners:
Hhal_0147
PFAM: peptidase S41; WD40 domain protein beta Propeller; KEGG: sru:SRU_2235 MdsD protein, putative.
  
 
 0.811
tolB
TolB, N-terminal domain protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.776
Hhal_0066
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpa:RPA4721 possible+E2677 pyruvate-flavodoxin oxidoreductase.
  
   0.691
Hhal_1413
PFAM: thioesterase superfamily protein; KEGG: aeh:Mlg_1456 esterase.
     
 0.686
Hhal_0781
Hypothetical protein; KEGG: ssn:SSO_P229 putative glycosyltransferase.
  
 
 0.678
Hhal_1428
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: aeh:Mlg_1826 peptidase M23B.
  
 
 0.565
Hhal_0471
PFAM: CheW domain protein; KEGG: aeh:Mlg_0991 CheW protein.
  
   0.517
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
  
   0.505
Hhal_1588
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; KEGG: aeh:Mlg_1995 lytic transglycosylase, catalytic.
 
 
 0.500
cpoB
Tetratricopeptide domain protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.491
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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