STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1421PFAM: regulatory protein, ArsR; KEGG: rxy:Rxyl_1608 transcriptional regulator, ArsR family. (113 aa)    
Predicted Functional Partners:
Hhal_1425
PFAM: regulatory protein, ArsR; KEGG: aeh:Mlg_1306 transcriptional regulator, ArsR family.
  
     0.572
Hhal_1112
PFAM: regulatory protein, ArsR; KEGG: aeh:Mlg_2713 transcriptional regulator, ArsR family.
  
     0.563
Hhal_1420
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: aeh:Mlg_1642 periplasmic sensor signal transduction histidine kinase.
       0.558
Hhal_0066
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpa:RPA4721 possible+E2677 pyruvate-flavodoxin oxidoreductase.
  
  
 0.557
Hhal_1422
KEGG: aeh:Mlg_2744 exporter, RND superfamily.
       0.542
Hhal_1424
KEGG: aeh:Mlg_2742 hypothetical protein.
       0.542
Hhal_1423
KEGG: aeh:Mlg_2743 putative outer membrane protein.
       0.538
Hhal_1419
Two component transcriptional regulator, Fis family; PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: aeh:Mlg_1641 response regulator receiver protein.
       0.469
Hhal_0309
Arsenite efflux membrane protein ArsB; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.
  
  
 0.411
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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