Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Hhal_1502PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: aeh:Mlg_0097 peptidase S1 and S6, chymotrypsin/Hap. (269 aa)    
Predicted Functional Partners:
Hhal_1503
KEGG: csa:Csal_2145 hypothetical protein.
       0.762
Hhal_1507
PFAM: lipopolysaccharide biosynthesis; KEGG: aeh:Mlg_0147 lipopolysaccharide biosynthesis.
 
     0.745
Hhal_1523
KEGG: aeh:Mlg_0149 hypothetical protein.
  
     0.743
Hhal_1524
KEGG: aeh:Mlg_0150 hypothetical protein.
 
     0.736
Hhal_1534
Multi-sensor signal transduction histidine kinase; TIGRFAM: histidine kinase; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; KEGG: aeh:Mlg_0158 periplasmic sensor signal transduction histidine kinase.
 
    0.730
Hhal_1540
Hpr(Ser) kinase/phosphatase; KEGG: tbd:Tbd_2497 HPr kinase.
 
     0.720
Hhal_1514
TIGRFAM: eight transmembrane protein EpsH; Eight transmembrane protein EpsH; KEGG: aeh:Mlg_0140 eight transmembrane protein EpsH.
  
     0.712
Hhal_1521
PFAM: lipopolysaccharide biosynthesis; KEGG: aeh:Mlg_0147 lipopolysaccharide biosynthesis.
  
     0.707
Hhal_1539
KEGG: rfr:Rfer_0709 hypothetical protein.
 
     0.703
Hhal_1558
PFAM: O-antigen polymerase; KEGG: aeh:Mlg_0119 O-antigen polymerase.
  
     0.702
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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