STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1520KEGG: aeh:Mlg_0146 hypothetical protein. (332 aa)    
Predicted Functional Partners:
Hhal_1521
PFAM: lipopolysaccharide biosynthesis; KEGG: aeh:Mlg_0147 lipopolysaccharide biosynthesis.
  
 0.956
Hhal_1518
SMART: AAA ATPase; KEGG: aeh:Mlg_0144 AAA ATPase.
 
     0.947
Hhal_1517
PFAM: polysaccharide deacetylase; KEGG: aeh:Mlg_0143 polysaccharide deacetylase.
 
     0.925
Hhal_1519
KEGG: aeh:Mlg_0145 hypothetical protein.
 
     0.920
Hhal_1514
TIGRFAM: eight transmembrane protein EpsH; Eight transmembrane protein EpsH; KEGG: aeh:Mlg_0140 eight transmembrane protein EpsH.
 
    0.910
Hhal_1515
KEGG: aeh:Mlg_0141 glycosyl transferase, group 1.
 
    0.905
Hhal_1516
KEGG: aeh:Mlg_0142 hypothetical protein.
 
     0.904
Hhal_1536
PFAM: polysaccharide export protein; KEGG: aeh:Mlg_0160 polysaccharide export protein.
 
 
 0.903
Hhal_1513
PFAM: glycosyl transferase, group 1; KEGG: aeh:Mlg_0139 glycosyl transferase, group 1.
 
    0.895
Hhal_1535
PFAM: sugar transferase; KEGG: aeh:Mlg_0159 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.895
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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