STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1527KEGG: aeh:Mlg_0153 hypothetical protein. (494 aa)    
Predicted Functional Partners:
Hhal_1526
KEGG: aeh:Mlg_0154 exporter of the RND superfamily.
 
   
 0.949
Hhal_1528
KEGG: aeh:Mlg_0152 hypothetical protein.
 
     0.922
Hhal_1519
KEGG: aeh:Mlg_0145 hypothetical protein.
  
     0.774
Hhal_1547
KEGG: aeh:Mlg_0107 VanZ family protein.
 
     0.755
Hhal_1509
PFAM: glycosyl transferase, group 1; KEGG: aeh:Mlg_0136 glycosyl transferase, group 1.
  
     0.734
Hhal_1539
KEGG: rfr:Rfer_0709 hypothetical protein.
  
     0.720
Hhal_1540
Hpr(Ser) kinase/phosphatase; KEGG: tbd:Tbd_2497 HPr kinase.
  
     0.710
Hhal_1558
PFAM: O-antigen polymerase; KEGG: aeh:Mlg_0119 O-antigen polymerase.
  
     0.702
Hhal_1523
KEGG: aeh:Mlg_0149 hypothetical protein.
 
     0.695
Hhal_1524
KEGG: aeh:Mlg_0150 hypothetical protein.
 
     0.678
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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