STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1528KEGG: aeh:Mlg_0152 hypothetical protein. (273 aa)    
Predicted Functional Partners:
Hhal_1526
KEGG: aeh:Mlg_0154 exporter of the RND superfamily.
  
 0.943
Hhal_1527
KEGG: aeh:Mlg_0153 hypothetical protein.
 
     0.922
Hhal_1422
KEGG: aeh:Mlg_2744 exporter, RND superfamily.
  
 0.859
Hhal_1424
KEGG: aeh:Mlg_2742 hypothetical protein.
 
     0.781
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
    
 
 0.641
Hhal_1519
KEGG: aeh:Mlg_0145 hypothetical protein.
  
     0.558
Hhal_1917
PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_1574 protein of unknown function DUF214.
   
 
 0.525
Hhal_1540
Hpr(Ser) kinase/phosphatase; KEGG: tbd:Tbd_2497 HPr kinase.
  
     0.501
Hhal_1530
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aeh:Mlg_0156 tetratricopeptide TPR_2 repeat protein.
 
 
   0.489
Hhal_0669
N-acetylmuramoyl-L-alanine amidase; PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: aeh:Mlg_0570 N-acetylmuramoyl-L-alanine amidase.
    
   0.488
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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