STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1570KEGG: noc:Noc_1959 esterase/lipase/thioesterase family. (304 aa)    
Predicted Functional Partners:
Hhal_1571
KEGG: aeh:Mlg_0132 glycosyl transferase, family 2.
     0.993
Hhal_1572
KEGG: aeh:Mlg_0133 hypothetical protein.
 
   0.963
Hhal_1569
KEGG: aeh:Mlg_0127 protein of unknown function DUF201.
 
    0.810
Hhal_0052
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; KEGG: aeh:Mlg_1601 AMP-dependent synthetase and ligase.
 
 
 0.790
Hhal_1514
TIGRFAM: eight transmembrane protein EpsH; Eight transmembrane protein EpsH; KEGG: aeh:Mlg_0140 eight transmembrane protein EpsH.
  
     0.765
Hhal_1564
PFAM: AMP-dependent synthetase and ligase; KEGG: aeh:Mlg_0125 AMP-dependent synthetase and ligase.
  
     0.765
Hhal_1760
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 
 0.764
Hhal_1568
KEGG: noc:Noc_1961 hypothetical protein.
 
     0.756
Hhal_1761
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: aeh:Mlg_1966 NADH-quinone oxidoreductase, E subunit.
   
   0.756
Hhal_1565
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: aeh:Mlg_0126 Orn/DAP/Arg decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.754
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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