STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1579KEGG: aeh:Mlg_0164 diguanylate cyclase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein. (324 aa)    
Predicted Functional Partners:
Hhal_0058
PFAM: EAL domain protein; KEGG: aeh:Mlg_2042 diguanylate phosphodiesterase.
 
    0.979
Hhal_1355
PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb2500 HD-GYP domain.
 
   0.953
Hhal_2149
KEGG: mgm:Mmc1_1929 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
 0.922
Hhal_1118
GAF sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: sde:Sde_1409 signal transduction histidine kinase-like.
  
 0.915
Hhal_0205
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sat:SYN_00230 response regulator receiver domain and a sigma factor phosphatase domain.
 
  
 0.910
Hhal_1865
KEGG: cvi:CV0368 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region.
 
   0.908
Hhal_0333
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: sma:SAV2747 phosphodiesterase.
 
    0.836
Hhal_0700
KEGG: rru:Rru_A2406 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; helix-turn-helix domain protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein.
 
  
 0.813
Hhal_0192
PFAM: EAL domain protein; KEGG: bam:Bamb_2985 diguanylate phosphodiesterase.
 
    0.799
Hhal_0098
Two component transcriptional regulator, winged helix family; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aeh:Mlg_1105 two component transcriptional regulator, winged helix family.
 
 
    0.715
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.