STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1603Photosynthetic reaction centre, cytochrome c subunit; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor. (362 aa)    
Predicted Functional Partners:
Hhal_1604
Photosynthetic reaction center, M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
 
 0.999
Hhal_1605
TIGRFAM: photosynthetic reaction center L subunit; PFAM: photosynthetic reaction centre protein; KEGG: rde:RD1_0104 photosynthetic reaction center L subunit.
 
 0.999
Hhal_1631
PFAM: photosynthetic reaction centre, H-chain; PRC-barrel domain protein; KEGG: rpe:RPE_1353 photosynthetic reaction centre, H-chain.
  
 0.996
Hhal_1410
Antenna complex, alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 
 0.993
Hhal_1411
Antenna complex, alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 
 0.993
Hhal_1607
Antenna complex, alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 
 0.989
Hhal_1606
Antenna complex, alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
   
 0.953
Hhal_1608
TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase, component 1; protein of unknown function DUF1197; KEGG: rpc:RPC_1295 chlorophyllide reductase subunit Z.
 
    0.919
Hhal_1630
KEGG: rsp:RSP_0292 hypothetical protein.
  
    0.898
Hhal_1633
TIGRFAM: magnesium protoporphyrin O-methyltransferase; PFAM: Magnesium-protoporphyrin IX methyltransferase domain protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: rru:Rru_A0619 magnesium protoporphyrin O-methyltransferase.
  
    0.855
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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