STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1614TIGRFAM: Phytoene dehydrogenase-related protein; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rru:Rru_A2984 CrtD protein. (520 aa)    
Predicted Functional Partners:
Hhal_1615
PFAM: hydroxyneurosporene synthase; KEGG: rpc:RPC_1288 hydroxyneurosporene synthase.
 
 
 0.989
Hhal_1612
hydroxyneurosporene-O-methyltransferase; PFAM: O-methyltransferase, family 2; Methyltransferase type 12; KEGG: rru:Rru_A2982 O-methyltransferase, family 2.
 
  
  0.969
Hhal_1618
PFAM: Squalene/phytoene synthase; KEGG: rpc:RPC_1262 squalene/phytoene synthase.
  
 0.913
Hhal_1611
TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rru:Rru_A2981 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide.
 
  
 0.753
Hhal_1613
Farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; KEGG: rru:Rru_A2983 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.733
Hhal_1621
Protoporphyrin IX magnesium-chelatase; PFAM: von Willebrand factor, type A; KEGG: rru:Rru_A0486 von Willebrand factor, type A.
 
  
 0.683
Hhal_1609
TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: rpd:RPD_3755 chlorophyllide reductase subunit Y.
 
    0.677
Hhal_1608
TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase, component 1; protein of unknown function DUF1197; KEGG: rpc:RPC_1295 chlorophyllide reductase subunit Z.
 
  
 0.674
Hhal_1638
PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: rpb:RPB_3982 2-vinyl bacteriochlorophyllide hydratase.
  
  
 0.595
Hhal_0577
KEGG: aeh:Mlg_0906 squalene/phytoene synthase.
  
  
 0.579
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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