STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1690KEGG: hch:HCH_04903 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Hhal_1178
PFAM: polysaccharide deacetylase; KEGG: tcx:Tcr_0020 polysaccharide deacetylase.
  
     0.719
Hhal_1179
Uncharacterized FlgJ-related protein-like protein; KEGG: ilo:IL1307 predicted peptidoglycan hydrolase, FlgJ family.
  
     0.697
Hhal_0054
KEGG: ilo:IL1450 hypothetical protein.
  
     0.652
Hhal_2376
KEGG: aeh:Mlg_2402 general secretion pathway protein C.
  
     0.582
Hhal_1691
PFAM: SpoVR family protein; KEGG: aeh:Mlg_1223 SpoVR family protein.
       0.554
Hhal_2050
PFAM: porin, Gram-negative type; KEGG: aeh:Mlg_0593 porin, gram-negative type.
  
 
 0.540
Hhal_0709
KEGG: aeh:Mlg_0517 hypothetical protein.
  
     0.526
Hhal_2268
PFAM: heat shock protein DnaJ domain protein; KEGG: aeh:Mlg_2497 heat shock protein DnaJ domain protein.
  
     0.522
Hhal_0471
PFAM: CheW domain protein; KEGG: aeh:Mlg_0991 CheW protein.
  
     0.518
Hhal_0329
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: pca:Pcar_0385 putative MSHA biogenesis protein MshL; Belongs to the bacterial secretin family.
  
     0.510
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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