Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Hhal_1709KEGG: hch:HCH_06945 protein of unknown function (DUF1439). (193 aa)    
Predicted Functional Partners:
Hhal_1708
PFAM: UvrD/REP helicase; KEGG: dps:DP0882 similar to ATP-dependent DNA helicase II (Rep).
       0.773
Hhal_1707
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mgm:Mmc1_0733 DEAD/DEAH box helicase domain protein.
       0.584
Hhal_1712
PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: aeh:Mlg_1552 protein of unknown function DUF335, SprT.
 
     0.507
Hhal_1032
PFAM: Sterol-binding domain protein; KEGG: aeh:Mlg_2134 hypothetical protein.
  
     0.491
Hhal_1448
KEGG: vpa:VP2842 fumarate reductase, 15 kDa hydrophobic protein.
  
     0.442
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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