STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1851TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: aeh:Mlg_0309 choline/carnitine/betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family. (543 aa)    
Predicted Functional Partners:
Hhal_1850
Hypothetical protein; KEGG: csa:Csal_3300 Cl-channel, voltage gated.
       0.538
Hhal_1849
Trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: aeh:Mlg_0833 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.428
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.