STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1887PFAM: peptidase M48, Ste24p; KEGG: tbd:Tbd_0982 putative Zn-dependent protease containing TPR repeats. (315 aa)    
Predicted Functional Partners:
Hhal_1889
Putative adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: hch:HCH_02328 adenylate cyclase, family 3.
     0.858
Hhal_1886
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: rfr:Rfer_2706 membrane protein involved in aromatic hydrocarbon degradation.
 
     0.824
Hhal_1888
PFAM: protein of unknown function DUF1058; SH3, type 3 domain protein.
  
    0.777
Hhal_1890
KEGG: rno:690456 hypothetical protein LOC690456.
       0.701
Hhal_1885
Hypothetical protein; KEGG: mpe:MYPE6470 DNA topoisomerase IV subunit A.
  
    0.636
Hhal_1891
KEGG: sde:Sde_1421 hypothetical protein.
       0.528
Hhal_1892
KEGG: sde:Sde_1422 ThiS, thiamine-biosynthesis.
       0.452
Hhal_1530
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aeh:Mlg_0156 tetratricopeptide TPR_2 repeat protein.
 
 
 
 0.420
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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