STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1902KEGG: aeh:Mlg_2006 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; PAS fold-4 domain protein; SMART: PAS domain containing protein; Exonuclease. (707 aa)    
Predicted Functional Partners:
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
 
 0.951
Hhal_1904
Integral membrane sensor signal transduction histidine kinase; PFAM: Na+/solute symporter; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: aeh:Mlg_0666 periplasmic sensor signal transduction histidine kinase.
 
 
 0.951
Hhal_2143
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: aeh:Mlg_0402 DNA polymerase III, delta subunit.
    
 0.947
Hhal_1226
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
    
 0.943
dnaQ
DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
 
 
0.937
Hhal_1901
PFAM: response regulator receiver; KEGG: aeh:Mlg_0669 response regulator receiver protein.
 
 
 0.935
Hhal_1453
KEGG: aeh:Mlg_1849 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein.
    
 0.926
Hhal_1679
KEGG: sru:SRU_0979 DNA polymerase III, alpha subunit.
    
 0.926
Hhal_0007
TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: aeh:Mlg_1415 DNA polymerase III, delta prime subunit.
     
 0.924
Hhal_0682
PFAM: DNA polymerase III chi subunit, HolC; KEGG: noc:Noc_0288 DNA polymerase III chi subunit, HolC.
     
  0.900
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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