STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1920KEGG: mth:MTH675 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Hhal_1919
KEGG: dvu:DVU1036 hypothetical protein.
       0.773
Hhal_1921
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abo:ABO_2368 probable ATP-binding ABC transporter protein.
  
    0.773
Hhal_1922
PFAM: transport system permease protein; KEGG: aeh:Mlg_2821 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.773
Hhal_1923
PFAM: periplasmic binding protein; KEGG: abo:ABO_2370 Fe3+-hydroxamate ABC transporter periplasmic binding protein.
       0.773
Hhal_1924
PFAM: protein of unknown function DUF820; KEGG: ana:alr4912 hypothetical protein.
       0.705
Hhal_0140
PFAM: iron-containing alcohol dehydrogenase; KEGG: syg:sync_2669 iron-containing alcohol dehydrogenase.
  
 
 0.669
Hhal_0066
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rpa:RPA4721 possible+E2677 pyruvate-flavodoxin oxidoreductase.
     
 0.603
Hhal_1917
PFAM: protein of unknown function DUF214; KEGG: aeh:Mlg_1574 protein of unknown function DUF214.
  
  
 0.592
Hhal_1916
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: aeh:Mlg_1573 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.540
Hhal_1918
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1576 ABC transporter related.
  
    0.531
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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