STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1930KEGG: sde:Sde_2017 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Hhal_1931
PFAM: protein of unknown function DUF1043; KEGG: aeh:Mlg_0881 protein of unknown function DUF1043.
       0.501
Hhal_1690
KEGG: hch:HCH_04903 hypothetical protein.
  
     0.433
Hhal_2036
KEGG: aeh:Mlg_2088 hypothetical protein.
  
     0.413
Hhal_0212
TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aeh:Mlg_1465 lytic murein transglycosylase.
   
    0.402
Hhal_1010
TIGRFAM: lytic murein transglycosylase B; KEGG: aeh:Mlg_0174 lytic murein transglycosylase B.
   
    0.402
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.