STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
Hhal_1947Hypothetical protein; KEGG: neu:NE2563 general diffusion gram-negative porins. (393 aa)    
Predicted Functional Partners:
Hhal_0980
PFAM: VacJ family lipoprotein; KEGG: aeh:Mlg_0305 VacJ family lipoprotein.
   
 
 0.753
Hhal_1946
PFAM: cytochrome c, class I; KEGG: aeh:Mlg_1673 cytochrome c, class I.
       0.623
Hhal_1945
Sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aeh:Mlg_1267 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.610
Hhal_1944
Protein-disulfide isomerase-like protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
  
    0.587
Hhal_1943
KEGG: tcx:Tcr_2005 hypothetical protein.
       0.521
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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