STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1964Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: aeh:Mlg_1670 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ. (475 aa)    
Predicted Functional Partners:
Hhal_1965
PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: aeh:Mlg_1669 two component transcriptional regulator, LuxR family.
 
 0.997
Hhal_0023
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pen:PSEEN3450 response regulator GacA (global antibiotic and cyanide control protein, LuxR/UhpA family).
 
 
 0.858
Hhal_1962
PFAM: Polysulphide reductase, NrfD; KEGG: aeh:Mlg_1664 polysulphide reductase, NrfD.
 
     0.637
Hhal_1957
PFAM: Nitrate reductase, gamma subunit; KEGG: aeh:Mlg_1659 nitrate reductase, gamma subunit.
 
   
 0.588
Hhal_1960
KEGG: aeh:Mlg_1662 hypothetical protein.
 
     0.574
Hhal_1961
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aeh:Mlg_1663 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
     0.547
Hhal_0366
KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.517
Hhal_1963
TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: aeh:Mlg_1666 cobyrinic acid a,c-diamide synthase.
       0.468
Hhal_1967
TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aeh:Mlg_1668 sulfate transporter.
  
    0.466
Hhal_1966
PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: tbd:Tbd_2201 probable transmembrane protein.
       0.460
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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