STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_1966PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: tbd:Tbd_2201 probable transmembrane protein. (421 aa)    
Predicted Functional Partners:
Hhal_1967
TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: aeh:Mlg_1668 sulfate transporter.
 
    0.805
Hhal_1939
Sulfate thiol esterase SoxB; PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: reh:H16_A3563 5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase; Belongs to the 5'-nucleotidase family.
 
     0.757
Hhal_1941
Thiosulfate-binding protein SoxY; KEGG: tbd:Tbd_0566 transmembrane proetin, twin-arginine translocation pathway signal.
 
     0.754
Hhal_1940
PFAM: beta-lactamase domain protein; KEGG: tcx:Tcr_1871 beta-lactamase-like.
 
     0.721
Hhal_1331
Sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aeh:Mlg_1267 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
    0.709
Hhal_1163
Sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aeh:Mlg_1267 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
     0.708
Hhal_1945
Sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aeh:Mlg_1267 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
     0.707
Hhal_1942
Sulfur compound chelating protein SoxZ; KEGG: bja:bll1012 sulfur oxidation protein.
 
     0.615
Hhal_1948
Hypothetical protein; KEGG: bja:bll2732 putative cytochrome c.
  
     0.601
Hhal_1527
KEGG: aeh:Mlg_0153 hypothetical protein.
  
     0.582
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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